【1.1】常见生物信息学文件格式汇总

General formats

• Axt format

• BAM format

• BED format

• BED detail format

• bedGraph format

• barChart and bigBarChart format

• bigBed format

• bigGenePred table format

• bigPsl table format

• bigMaf table format

• bigChain table format

• bigWig format

• Chain format

ENCODE-specific formats

• ENCODE broadPeak format

• ENCODE gappedPeak format

• ENCODE narrowPeak format

• ENCODE pairedTagAlign format

• ENCODE peptideMapping format

• ENCODE RNA elements format

• ENCODE tagAlign format

Download-only formats

• .2bit format

• .fasta format

• .fastQ format

• .nib format

• CRAM format

• GenePred table format

• GFF format

• GTF format

• HAL format

• MAF format

• Microarray format

• Net format

• Personal Genome SNP format

• PSL format

• VCF format

• WIG format

参考

https://genome.ucsc.edu/FAQ/FAQformat