【4.2.5】预测RNA二级结构LinearPartition

一、安装

• 需要python2.7

• 需要Pdflatex

  cd /data/software git clone https://github.com/shanry/LinearPartition.git cd /data/software/LinearPartition make

latex一直缺库，最后直接用的线上的latex工具：

• https://www.overleaf.com/
• https://texviewer.herokuapp.com/ (个人推荐这个)

二、使用

[root@4c2bdfc52747 LinearPartition]# echo GGGCUCGUAGAUCAGCGGUAGAUCGCUUCCUUCGCAAGGAAGCCCUGGGUUCAAAUCCCAGCGAGUCCACCA | ./linearpartition -V -M --rewrite test.bpp --mea_prefix test.ss

三、我得案例

cat test/cfl.fa | ./linearpartition -V -M --rewrite test/cfl.bpp --mea_prefix test/cfl.ss
cat test/cfl.ss_1 | ./draw_bpp_plot test/cfl.bpp

参考资料

• https://github.com/shanry/LinearPartition